rs46535470 SNP Detail

Summary

• ID
  rs46535470
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51907806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGCAGAGA TGCGAATACA
  GGATGACATG TGTGAGGGAC TCTGGCGCTT CCTGTGGGCC ACGGGTGCTT CCTGTTAGAG
  AAGAAACATC TGCCCTGCCA CTCTGGCACG GACTTTACAT ACAGTCTCAA GTTTCAGTTA
  GCGGTCCTCT CCACTTCCTG TCCCAAGCTA TTGGGCAAGA CTTGGTTTTC ACCTTCCTGA
  S
  ACCTCAAGAG TAGGGTAGCA GAGCGCCCTG AATAGCTCAG CGATATCGGG CTGCATCGGG
  ATAGGGGTCG GGGAGAAAGC AAGTCCACCT ATAGGGACAA AGCAACAAGC TATTCAAAGT
  CAAGGCTGTT CTCAGAAGCC ACGGCTCTAT GGACATGCTA TACACATTTT CAGGTTGTTC
  CTCTCTTCCC TTTACCTCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60411388	NES15908699	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs46535470					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60411388	NES15908699	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51907806 () rs orientation: forward

Symbol	Name	Function Class
D3Wsu174e	DNA segment, Chr 3, Wayne State University 174, expressed	480 bp proximal
Gm37465	predicted gene, 37465	351 bp downstream
Maml3	mastermind like transcriptional coactivator 3	Intron
Rr397662	regulatory region 397662	126 bp downstream
Rr397663	regulatory region 397663	822 bp upstream
Rr576433	regulatory region 576433	1068 bp distal
Rr576434	regulatory region 576434	within coordinates
Rr576435	regulatory region 576435	1113 bp proximal