rs46532742 SNP Detail

Summary

• ID
  rs46532742
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:134601135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACCATAGG CCGCTGAGTG
  CCACTGAACA CACAGTGAGA ACCGAACTCG GGTCCTCCGG GAAGCATTCT TTTTTTTTTT
  TTTTAAAGAC TTATTTATTT ATTATTATTT GTAAGTACAC TGTAGCTGTC TTCAGACACT
  CCAGAAGAGG GTGTCAGATC CCATTACAGA TGGTTGTGAG CCACCATGTG GTTGCTGGGA
  W
  TTGAACTCAG GACCTTTGGA AGAGCAGTCA GTGCTCTTAA CCGCTGAGCC ATTTCTCCAG
  CCCCTCGGGA AGCGTTCTTA ACCAGAAGTT CGCTATCCAC CGCGCCAGCT CCCGAGTCTC
  CATTTAAACC TCCCCCCCCT TACTCCTCTG CCTCATGGTC TGCATCTTAC TGAGTTGTGG
  GCCTGGTGAC ACTTTTCCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145511016	ENSMUSSNP773628	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46532742					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134601135 () rs orientation: forward

Symbol	Name	Function Class
Rr418973	regulatory region 418973	1007 bp proximal
Rr418974	regulatory region 418974	1088 bp proximal
Syt2	synaptotagmin II	Intron