rs46527836 SNP Detail

Summary

• ID
  rs46527836
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108429142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACCTTCA CTGGCACCCA
  TAAAGTTGTT AATTGTTTTT CTTTGTTACT GTTGGTCACA AATCAATTCT GTGCCTGTTT
  GATCTCCCAG TAGTTTTCGG CCAGGATTCA GTTACAACTT CCATTCAGCC AGGGAATTGC
  TAGTCAATAA TATGTATAGA GCAGCCTAGC ACGGGTTGGA ATGGGACAGA GAAACAAGTT
  Y
  TCATCTTTGG AGCTCATCCT CTCGGACACC TTGCTGTGCA CCCTACCTGC CTTGACGGCA
  TGATGCCAGA GTTGGATGCT TTCCCCATAC AGCAGCAGGA CAGCCCTTCC ATAGCTACCA
  TGTCTTTCTT AGCATTATTG TCAGTGACAC TTCCTAAGAG AAGCCTGGTC ATCTTGTCCC
  CTGTCTTCAA AGTCTCCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133502634	ENSMUSSNP470452	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46527836					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108429142 () rs orientation: forward

Symbol	Name	Function Class
Gm35165	predicted gene, 35165	within coordinates
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636110	regulatory region 636110	1569 bp distal
Rr636111	regulatory region 636111	1462 bp proximal