rs46526400 SNP Detail

Summary

• ID
  rs46526400
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58789598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATAGTAAC TGATGGTAAT
  AAGACAACTA ATCACGAAAT GATCAATACT TTGTTAAATT ATCTTTTCCG TTGCTCCTAT
  ACAGGAGCTT TCCTCTGAAT CCCAGTATTT GCTTGGTAAC ATTCAAAAGA AGCAATGAGG
  AAGGGGGCTG CTCTGGGAAT GATTGCTTTC AAATGTCTAT TTGGGCTGTA GAAATGGCGG
  K
  AAAGAAACAC CTCTCTGCAG TCTCTGGTGG CCACTGTCAT TGCTCAAAGG AAGCTTCAAT
  TGAGAAGACA GCCTTAAGCC GCTTACTGTT TTATATTAAT GGGGCAGCCA CTTTACCACT
  AAGAGAACTT ATCTGAGGTT CTCTTCTTTT AAGCAAGTTG ATGTAACATC ATTGGCTGGG
  TAGGGATGGC ATCTTGAATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135210134	ENSMUSSNP6699486	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46526400					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58789598 () rs orientation: forward

Symbol	Name	Function Class
Clrn1	clarin 1	Intron
Rr375038	regulatory region 375038	209 bp upstream
Rr577289	regulatory region 577289	692 bp proximal
Rr577290	regulatory region 577290	1279 bp proximal