rs46523245 SNP Detail

Summary

• ID
  rs46523245
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87080342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGC TCCAGGGAGG GAAAGGGAAT
  Y
  GAGACCCCTA AGCTAAGCCA AGCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135455070	ENSMUSSNP4512880	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320831251	CHEV_3_86976957	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs46523245					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87080342 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13330	CpG island 13330	1174 bp proximal
Gm64310	predicted gene, 64310	within coordinates
Kirrel1	kirre like nephrin family adhesion molecule 1	Intron
Rr579454	regulatory region 579454	369 bp distal
Rr579455	regulatory region 579455	632 bp proximal
Rr579456	regulatory region 579456	1133 bp proximal
Rr579457	regulatory region 579457	1505 bp proximal
Tssr33927	transcription start site region 33927	1423 bp downstream
Tssr33928	transcription start site region 33928	1483 bp downstream
Tssr33929	transcription start site region 33929	1597 bp downstream
Tssr33930	transcription start site region 33930	1622 bp downstream