rs46520726 SNP Detail

Summary

• ID
  rs46520726
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148222742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCTCTAT GGTGAAAATA
  TGCAAATAAC ATTGAAAATG GGGATTCAAG AAACAATAAG TTGCCTCATA ATGCAATCTC
  TGTCTTACAG CCATCCATCA CACTGATGTA GCTAACGTGA AAACCCAGGC ACTGTAGAGC
  CAAAGGCAGA GGTCTCCAAG GCAGAGGTCT CCAGCTGGTC CCATGTTACC TTAGCCTCCC
  C
  CCTATGCCCT TGTTCCATCC CTGAGGAATC TCCCCCACCC CACCTCTACC CTGCATCAGT
  AATGAAAACG CTGTTCAGGA GCTGGGGGGT GGGGTGGATA AAGGACTCGG TCATTCCCCA
  CCCCACCATG ATGAAAACTC ACTGCCCTAA GGTCTACAAG GCAGTGAGCT GCCCAGCCAG
  CTCTAAGTAG AAAGGGCTCT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss147994215	ENSMUSSNP6591321	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs46520726					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148222742 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15292	CpG island 15292			1581 bp proximal
Mad2l2	MAD2 mitotic arrest deficient-like 2			Intron
				Noncoding-Transcript-Variant
Rr398855	regulatory region 398855			1999 bp upstream
Rr604600	regulatory region 604600			1352 bp proximal
Rr604601	regulatory region 604601			1407 bp proximal
Rr604602	regulatory region 604602			1707 bp proximal
Rr604603	regulatory region 604603			1920 bp proximal
Rr604604	regulatory region 604604			1968 bp proximal