rs46516713 SNP Detail

Summary

• ID
  rs46516713
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19684282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCACTGTCT TCCTCCGCTT TCCCAGAACT GGGGTTATTG
  GTGTTCACCA CAGTGCTTTG CCACTTAAAT CTTATTTGTG AACAATAACA ATTCCTGTAA
  S
  TGTATGTGGT AAAAAGAGAA AGGAATGTCA AGTCAGATAG TAGGGATGGT ATCTGCACCA
  GAATCCAGAC ACTTCCTGAG GTCAGCAATC CAGACAGGGA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60376852	NES15884496	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46516713					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60376852	NES15884496	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19684282 () rs orientation: forward

Symbol	Name	Function Class
1700064H15Rik	RIKEN cDNA 1700064H15 gene	1385 bp upstream
Cpgi13003	CpG island 13003	1041 bp distal
Cpgi13004	CpG island 13004	47 bp distal
n-TAagc14	nuclear encoded tRNA alanine 14 (anticodon AGC)	1051 bp downstream
n-TYgta1	nuclear encoded tRNA tyrosine 1 (anticodon GTA)	1671 bp downstream
n-TYgta2	nuclear encoded tRNA tyrosine 2 (anticodon GTA)	1248 bp downstream
Rr574008	regulatory region 574008	1452 bp distal
Rr574009	regulatory region 574009	895 bp distal
Rr574010	regulatory region 574010	106 bp proximal
Tssr32702	transcription start site region 32702	1433 bp upstream