rs46514649 SNP Detail

Summary

• ID
  rs46514649
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:118977172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATCTCTTG CTCTGAGCTC
  TCAAGAACTT TTGTTTTCTC CCCAGTGAAG GGTAGGAAGG CTAGAGAAGG GCAGGGTCAT
  GTCTCCAGTG CTGAACAATG TGACTGTTCC CATTTTGCAG ATAGGCACAT GGAGGGTAGG
  GAGGCAGTGG GGCAGGGAAA CCCAGCTAGC CTGCAAGAAT TCCTATTGGC TAGACTCAGG
  Y
  CATTGCCCTT GGCTTTGAAT CCAGAGCCTT TCTTCCCCAT CTGCACTGTC CCTTTCATTC
  AGTTTGGCCT TCCTGGTGAG GGAGGGAAGG TTGGTTCCTC TTCCTCCCAC AATGTGGGGC
  TACCTGAAAT GTAAGTATCA CTCCTACCTG GGTAGTGAGA CCTTGGAAAG CCAAAGGCTC
  TCTAACTGCA TAAAGAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147324310	ENSMUSSNP6064893	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46514649					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118977172 () rs orientation: forward

Symbol	Name	Function Class
Rr377076	regulatory region 377076	308 bp upstream
Rr598496	regulatory region 598496	67 bp distal
Rr598497	regulatory region 598497	836 bp proximal
Slc2a1	solute carrier family 2 (facilitated glucose transporter), member 1	Intron
Tssr38701	transcription start site region 38701	439 bp upstream