rs46511500 SNP Detail

Summary

• ID
  rs46511500
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126340121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATTACATT AGCCTCTCCA
  CCATCTTCAA AGCCAAATAG AATGGACAAA TGTGTAGGCG TGGAACGGTA GGCGTATGAG
  CAAGAGCTGA AGCCCCGGGG GTGAATGGAA GAACCAGAGG AAAGAAAGAC CAGGAGCTGA
  GGAGAATGAG CCGGTTCAAG AGCAATGACA GAGTGAAGGG AGGATTCACC CTTAAAAGAC
  M
  GGTTCGGGAA GGGCGTGGCA CAGGAGAGAC CTCAGGAAAC CGCAGTCTAG AGAGTAAATC
  GGGGAAAGGG AAGGGGCCCA GAGTAAGGAA GAAACGTGTT TCTGGAAAAG CAGAGCCCTC
  AGAATGTCTA ATACTCACTT ACAAATGTAT TTACCGACAT GTAAAATATT TACCATAACT
  ACGAAGCTGC TGTTCTCTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147505057	ENSMUSSNP1954243	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46511500					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126340121 () rs orientation: forward

Symbol	Name	Function Class
Atp8b4	ATPase, class I, type 8B, member 4	Intron
Rr564345	regulatory region 564345	1677 bp distal
Rr564346	regulatory region 564346	670 bp proximal
Rr564347	regulatory region 564347	1242 bp proximal
Rr564348	regulatory region 564348	1636 bp proximal
Tssr632	transcription start site region 632	1814 bp upstream
Tssr19934	transcription start site region 19934	864 bp upstream
Tssr19935	transcription start site region 19935	1774 bp upstream
Tssr26038	transcription start site region 26038	27 bp upstream
Tssr26039	transcription start site region 26039	1480 bp downstream
Tssr26040	transcription start site region 26040	1513 bp downstream
Tssr26041	transcription start site region 26041	1530 bp downstream
Tssr26042	transcription start site region 26042	1575 bp downstream
Tssr26043	transcription start site region 26043	1638 bp downstream
Tssr26044	transcription start site region 26044	1713 bp downstream