rs46504962 SNP Detail

Summary

• ID
  rs46504962
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27158251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTCTTCAG GCACTGAGAA
  GCCACAAGTT AGCATGACCA GGCCTGTAAC TGCAGAACTG TGAATACCAT CTTTTAAAGT
  ACAAGGAGAA AGCCTGATAA AACTCAGAAC TGACTGAAAT GCCAAACTAC AAGCAAATTA
  TTAAACAATA TGTCCTACAA TTACAATGGC TATTTATTTT AAAAGGCTAT TTAAAATAAA
  R
  CAAAAGTTAA CTATGTATGC CTATTTTGCT CTCCACCATT AGCAGCCAAA CAGCTTATTT
  TGCTAAAGCT TTCTTAGTTT CTTCACGTTT CTTCACACTT GGGGCCGAAG ATGTCGCCCA
  GGCATTAACT GATACACTGC TGTAGCAGAA GCCAGCGTGC AGTCCTCAGC ACCCATTGGA
  AGACTCCCAT CTGCCCTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134702089	ENSMUSSNP2702469	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46504962					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27158251 () rs orientation: forward

Symbol	Name	Function Class
Ect2	ect2 oncogene	Intron
Rr574344	regulatory region 574344	746 bp distal