rs46503849 SNP Detail

Summary

• ID
  rs46503849
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102276898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTGCTTC CAGAGCCACT
  GGGGGCTTTC CTTCCTCATT CTCCTCCATT CTGTTTGTCT TCTTCTCACT ATTTGGGATC
  AGTTGTTGTG TGGGGTGAAG CAGTACATGG AGGGGCAAAG TAGCACCCAA GGTCAGATGA
  TCCATGACTC ATAAATAGCT TCTAATATCT GAGGAGCCTG CAAAATTCCA CAGCTCATCG
  Y
  TCCCCGAAAC TAACGGGCCA TGTGAAAAAC AGAACTACAG TCTCCCCGTA AGGAAGAGGG
  AGGTACCTAT GCTAACTCTA CCACAGAGGA CATCTTCAAA AATAGATGCC CTAGTGTGGC
  GACCATGTTG TCTAGGTATC TCTTGCCAGA CTCATTCACT CCTCTCCAGC CCGTAGAAAG
  TGTTCTTATA ACCACAATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss147112198	ENSMUSSNP3408205	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320437717	CHEV_2_102286710	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs46503849					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102276898 () rs orientation: forward

Symbol	Name	Function Class
Rr561693	regulatory region 561693	1271 bp proximal