rs46498844 SNP Detail

Summary

• ID
  rs46498844
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:35403432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATAGCTGG AGAGGTCCTA
  ATGGCATCTA AGGCATGGAG GGCAGGGATT CTGTTCATCA TTTTATGGTG AGCAGGCCAG
  TCCCCACTTC AAGGAATTAT CCTGCTCCAA TGCCAAGTGT GAGGGATCCG GGACTAAATT
  AGGAACCAGC TTGGCCCACT TAAGGACTAG AAATGAGGTC AGTGCCTGGC AACTGGTCTC
  R
  GAAGGAATGC ATGACAGAAT ATGAGTCAGA GAGGTGGGCG GGCCCAGCTG ACAACCCTTC
  TAGGACTTGA TGAGGGCTTG AAGCTATCAG GGGGTCTAAG GAGGGAGGTG ACTTGCTGTG
  ATGTATATCC TAGAATGACA CTCTACTGTC TGAAGACAGA TGCCTGTGGG ATGGGACAGA
  GGGCCTGCTA CAGTTGACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60877162	NES15975744	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46498844					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60877162	NES15975744	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:35403432 () rs orientation: forward

Symbol	Name	Function Class
Rr628509	regulatory region 628509	within coordinates