rs46498587 SNP Detail

Summary

• ID
  rs46498587
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101260484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAACTGAG AGTTGAGAAA
  TGAGTCCAGA AGATGACACA GAGGTGGCTG CAGAAGCACA TGGCTGGGAC AGGAGTTCAG
  TCACAGCCAG CATCCTACAG GACAAAGGCC TCGTGCTGAT CACTGGTAGG ACAAACTCAC
  AACCTCCTGT AACTCCAGCT CATGGCATCC AGCGCCCTGT CTGGCCTCTG GGTACCTGAA
  K
  GCACATGGCA TACAAACATA CATACATACA CATCAATAAA AATATTATTT TTACCTTTGA
  GGCAGAGTCT CACTACATAG CCCTGGCTGA CTAGGAACTC TATATGTAGA CCAGGCTGGC
  CTAGAATTCA CAGAGATCCA CCTGCTTCCA TCTCTTGAGT GCTTGAAAAA TACATCTTAA
  AAAAGAAGAC CTATCCTTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
ss135546706	ENSMUSSNP4983880	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		T
ss320851916	CHEV_3_101157091	CHEVERUD	SCREENING_POP	f	SNP			G		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
rs46498587					SNP	G	G	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101260484 () rs orientation: forward

Symbol	Name	Function Class
Gm32900	predicted gene, 32900	within coordinates
Rr582017	regulatory region 582017	1050 bp proximal
Rr582018	regulatory region 582018	1288 bp proximal