rs46495650 SNP Detail

Summary

• ID
  rs46495650
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:88726209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTGTGGCT TCTGAGGAGG
  ATGGGAGTTT TCACTTCAGT TGGGACCAGC CTGGTCTCTG CCTGTGGTCA GAGAACAACT
  TGTTCTAGCC CTGTTACTTG ATCAGGACTA GGGTTTACAT AGGGAAGGAC TTTGTCTCTA
  GACTTCTCTC CTCTCCACCC TTGTAAATGG TCTAGTGAAG GCTCAGGGTG ACATAGATGC
  R
  TTCTAAATTG AACTTCATTT TGGCTGATGC CTTAAATTAT GAAAATTGTC CATCTTTATG
  TAGTACTGTG TGATAATTCA TACATGCGCA CACACTGTCA AGTTTTATAC ACTTTAAACA
  TGGATCTCCT CAAACACTAT TTTCTTTTTG TAGATAAAAC ACTGAAAACC CTTTCTCACA
  ATTTTAAAGC TGACTATGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63332823	NES17507970	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46495650					SNP	A	A	A	A	A	A	G	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63332823	NES17507970	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88726209 () rs orientation: forward

Symbol	Name	Function Class
Gm13288	predicted gene 13288	mRNA-UTR
Rr595118	regulatory region 595118	1955 bp distal
Rr595119	regulatory region 595119	1809 bp distal
Rr595120	regulatory region 595120	1467 bp distal