rs46495289 SNP Detail

Summary

• ID
  rs46495289
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:24605399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GGAATATTTC CCAACTTCAA AGATAGTGTC ACTCTGGAAT
  TCCAAAGGGA ATTCTAAGAT GCAATGAGCA TGTTTCTTCT GTAAATATGA AAATAAACTT
  Y
  TTTTTTTATG TCCTAAGATT CATATGGGCA GCAAGCCTCG CAAGATCTCT TTGCAACTCT
  GGCATCTCAG TTACTGAGCT CAAATCACTT AAAGAAATAT G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss133080124	ENSMUSSNP1711224	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46495289					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:24605399 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17203	CpG island 17203	1387 bp distal
Lmod2	leiomodin 2 (cardiac)	mRNA-UTR
Rr627250	regulatory region 627250	1216 bp proximal
Tssr59989	transcription start site region 59989	1931 bp upstream