rs46494721 SNP Detail

Summary

• ID
  rs46494721
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17719376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCA TGTGAGGTTG CTGAGCTGCA
  A
  AAAGCTTTCT GTGAATGCTG TCTTC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss133021351	ENSMUSSNP6698538	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321756103	CHEV_6_17669377	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs46494721					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17719376 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm43533	predicted gene 43533			within coordinates
Rr626841	regulatory region 626841			700 bp proximal
Rr626842	regulatory region 626842			1984 bp proximal
St7	suppression of tumorigenicity 7			Intron
				Noncoding-Transcript-Variant