rs46491056 SNP Detail

Summary

• ID
  rs46491056
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:13152968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTAAAAC TATCTTGAGA
  TATCTTCAGC AGAGGTTTAA AGAGTACTCT GCAAAACGGG TGACAAGCCT AACTGTGAGT
  CCCCTCCCAC AAAACAGCAA AACACAACAC CAAACAAAAG CCTACCTCTG TCTTACAGTA
  GAACCCTTCT TACTTAGCAG AGTGGTCCAG CAGCTGTGGC CCACGATGCT TTAGACAGCC
  R
  TGGAAATGGG AAGAATGGAG TTTCAGGTGT GGTCTTTTAA CACTCATGCA CTCTTCTTTA
  TACCAACATG ACTATAATAC ATAATTTTGT TTATTTGGGA GACTGGGGAT TAGAACCACA
  ACCTTCCTGA GTGCTGAGTA TGTACACGTC CTTTAAGCAC TATGCCCAGG CTTAGGTTTT
  AAATGGAAAA AGCACATGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss60864611	NES15985709	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	G	A	A	A	A		A	A		A
ss321747186	CHEV_6_13102969	CHEVERUD	SCREENING_POP	f	SNP											A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs46491056					SNP	A	A	A	G	A	G	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60864611	NES15985709	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13152968 () rs orientation: forward

Symbol	Name	Function Class
Rr626556	regulatory region 626556	417 bp distal
Rr626557	regulatory region 626557	503 bp distal