rs46490429 SNP Detail

Summary

• ID
  rs46490429
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117668634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGGAAGA AACCCTCGGC
  ATGATAAGGA AGTCGGACCC AGCTGTCCCC AGTTCCCATG ACCCTGGGGC TCCATAGCAG
  GAGCTCACAA CATGACCCAG GCATTCTTTC CCTTAGAATG ATACGACCCT TGGCTGATGT
  GTTGTTAGTG ACATTGGTTT CATCATGATG TTTTTTTTTT TTATTTAAGA TTTATTTATT
  K
  GTTATATGTA AGTACACTGT CGCTGTCTTC AGACACTCCA GAAGAGGGAG TCAGATCTCC
  TTACAGATGG TTGTGAGCCA CCATGTGGTT GCTGGGATTT GAACTCCGGA CCTTCGGAAG
  AGTAGTCGGG TGCTCTTACC CACCAGCCCG TGATGGTTCT TTAACAACAA CCCAGAGAAA
  GCCATACAGT GTTGAGTTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss147294300	ENSMUSSNP4591049	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46490429					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117668634 () rs orientation: forward

Symbol	Name	Function Class
Gm68791	predicted gene, 68791	1406 bp downstream
Rr598215	regulatory region 598215	1617 bp distal
Rr598216	regulatory region 598216	297 bp distal
Rr598217	regulatory region 598217	34 bp proximal
Rr598218	regulatory region 598218	1459 bp proximal