rs46486856 SNP Detail

Summary

• ID
  rs46486856
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135208587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCCACATA GTGGGAGGAA
  AGAGTCGCTT CCTATACATT CTCCTCTGGC TCCATACGTG AGGCCTGGCA CTTGGGTCCC
  CCTCCCCCAT CAGTAAAATG GAAAAAAAAA GTTGGAATTG TATAAGTGGG AGAAACTAGC
  CTGTAAATTC TCTTCATGTG AGAAAACACA TCTAGCATGA TTGCCTTCTT GGGCTTCCCT
  C
  GTAGCTTCCT GCAAGGAACA CAGACACAGG AAGGAGACCC AAGCCCTGCT GCCCCCGCTA
  GCCCTGGGGT GCAGTGTGTT GACGTCCTTG GCTGAGCTGC CCTCGAAGCT TGCTAGTCTT
  TTTCTTTCAT GATATTTTTA ACCATCTTGG TTTAAGTCCA CAGTGCGGAG TTATAAATAG
  GGCTGAGTGA AGACATTTGG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135926778	ENSMUSSNP1734712	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46486856					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135208587 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Manba	mannosidase, beta A, lysosomal			Intron
				Noncoding-Transcript-Variant
Rr585725	regulatory region 585725			10 bp proximal