rs46484567 SNP Detail

Summary

• ID
  rs46484567
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142148896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGAACAC ACTAATGTGT
  GGAGTTCCTT GGGTGACAGT ACTTTAAACA GTATATTTTA GATATTACAC ATATTTACAC
  TATATATCTT CAGAATCTGA GAATTATCAG GGAGGGTCTG TGAGTCTTGG CTTGTAGGAG
  CCCTCACTCT GGAAAACGTA GGCAGCGCTG CCCTGATGGA TTTCAGGCTG AGTGACAGGC
  Y
  GATGGTGAGC TATTTTGGGC AAAGGGGCTC TCATTGCAGC TGCCTGTTTA AGATGAAGGG
  CAAAGTTCGC TTGTACAAGT CTAGCGTTGC CAGCCCACAT GTTTACTTTC ACTTGTAAAC
  ACAGTACTTT GTGTCAGACG TTATTTCCTT TGCAAATCAT AGGTGGCACC GTTCTTAGTT
  ATTTGACAAC CAATAAAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61087256	NES16608382	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46484567					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61087256	NES16608382	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142148896 () rs orientation: forward

Symbol	Name	Function Class
Gm64781	predicted gene, 64781	within coordinates
Rr586433	regulatory region 586433	654 bp distal
Rr586434	regulatory region 586434	within coordinates
Rr586435	regulatory region 586435	405 bp proximal