rs46481982 SNP Detail

Summary

• ID
  rs46481982
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152496444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTTGTGT AGCAGTTACA
  GTTACTGTGG GAATCATCAT TCAAAGTTCT GATGCTTGCG TTTCTGGAAT CTTTACAACA
  AATATGAATT AACATATTAT CCTTTCCTAT TTCTTTGTAC CAAAATTAAG CCCATCTATG
  GTAGATGCTG TTCTAACTTG TGAAAGATAT TTTGTAAACA CAGTGCAAGA TACAGCCTTG
  R
  AGCCGTGACC AGAATCCAGC TCTGCTCTGT GGCACCAGCT TCACTGCTTC ACAGTTTCAC
  TCAGAACCTC AGGGCCTTAA CTGCTGTCTG TGGCCTGCAT AGCTGCTGGC CAGCACACCT
  CAGGGGAGCC CGGGCCCGCA CGCCAACTGC TGGCCAGCAC ACCTCTGCAC GGCTGCTGGT
  CAGCACCTCA GGGGTTGCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss61101176	NES16612837	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs46481982					SNP	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61101176	NES16612837	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152496444 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pigk	phosphatidylinositol glycan anchor biosynthesis, class K			Intron
				Noncoding-Transcript-Variant
Rr587606	regulatory region 587606			1093 bp proximal