rs46481920 SNP Detail

Summary

• ID
  rs46481920
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:71763868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATGTAGCA GCTCCTGTTT
  CCTCATCCCC ACCCTTGTGC TAGCCCACTT TTCACACCAC AGACTACATC CACTCTCTTG
  ACTTGCTGCT GGAAACATAA CTTTGCCTTT GTAACCAGTA ACCACAAGGA GGCAGTTTTG
  GCAACAGCCT GCTGTCTGAC TAGATGGGCA TCATTCACTG GGAAATCGAA TTATGTTTTC
  T
  CATTCCTTTA TTTTATTCCC AGTCAGTCAG TCTGACCTTT TAAAAATAGG ACTCAGAGTT
  GCTATTTCTA GGATGATAAG AGGACGTTCT ATAGGTGTAA TGCAAGAAGG CATGGAAAGA
  TAAAGATGAG ACAGGAAGGG AAAAGAAACA GTCAGCCACT TGCATAGCTC CTGCAACAAC
  AGTCCATGTT AGAAGGGCAG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133277282	ENSMUSSNP3251666	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46481920					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71763868 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Reep1	receptor accessory protein 1			Intron
				Noncoding-Transcript-Variant
Rr632005	regulatory region 632005			62 bp distal
Rr632006	regulatory region 632006			1304 bp proximal