rs46476988 SNP Detail

Summary

• ID
  rs46476988
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:120871052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGTT CTGTATAAAG GAATATATGT
  R
  GGGAGGCTAT GTGTGAGTTC TGTAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147376959	ENSMUSSNP518695	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320481389	CHEV_2_120866307	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs46476988					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120871052 () rs orientation: forward

Symbol	Name	Function Class
Rr563766	regulatory region 563766	966 bp distal
Rr563767	regulatory region 563767	621 bp proximal
Rr563768	regulatory region 563768	701 bp proximal