rs46475894 SNP Detail

Summary

• ID
  rs46475894
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116762826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTTTTCC TGTGAGCCTG
  TGTGTGTTTA AAGTTATCTC GCTTAGTTTA TCTCGGGGGG GGGGGGGGGA TGAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAA GTGCTAAGTC
  ACTTGTTTGT TATCTCCCTC TGCTTGGCTT TAGGTAATGG TGATGGCTCC TTTAGTAACC
  K
  AAGAACCCTT AGAGTAGAAT ATTTGCATCA AGCTCAGCTC CCCTCTCAAA GTCCCACCGC
  AGGCAGCCTT CTGACAGAGA CCTTAGACTC TTAGGTCTTG GAAAGCAAAA CAAAACAAAA
  CAAAACAAAA AAACCCAAAG GTGTTAACGT GATGATTGAT GTTGGATATC TGGGGACTGC
  AGCACCTTTT TTGGACCCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60435445	NES15933263	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46475894					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60435445	NES15933263	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116762826 () rs orientation: forward

Symbol	Name	Function Class
4930455H04Rik	RIKEN cDNA 4930455H04 gene	Intron
Cpgi13743	CpG island 13743	307 bp distal
Gm52613	predicted gene, 52613	1164 bp downstream
Palmd	palmdelphin	Noncoding-Transcript-Variant
Rr583815	regulatory region 583815	1973 bp distal
Rr583817	regulatory region 583817	900 bp distal
Rr583818	regulatory region 583818	within coordinates
Tssr35360	transcription start site region 35360	626 bp upstream
Tssr35361	transcription start site region 35361	609 bp upstream
Tssr35362	transcription start site region 35362	544 bp upstream
Tssr35363	transcription start site region 35363	485 bp upstream
Tssr35364	transcription start site region 35364	409 bp upstream
Tssr35365	transcription start site region 35365	388 bp upstream
Tssr35366	transcription start site region 35366	362 bp upstream
Tssr35367	transcription start site region 35367	343 bp upstream
Tssr35368	transcription start site region 35368	239 bp upstream
Tssr35369	transcription start site region 35369	173 bp upstream
Tssr35370	transcription start site region 35370	150 bp upstream
Tssr35371	transcription start site region 35371	337 bp downstream