rs46473219 SNP Detail

Summary

• ID
  rs46473219
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41332129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTCTGGCC TTTCCTCTGT
  CCCCTCTCCT CTCAGCTACA ATTGATCTTG AGAGATCAGT TAGTGAAAAA CTGAAAAGCA
  CTGCTTCATG ATGCTGCTTC TCTGAGGCCA TCATCCATGA AGGGCAGGAC TTTCTGGGAA
  TGAAGCTGGC TTTGGGTCAT CCATGATCCT AAAAGCAACT CTTCACACAT GCTAAGTTGG
  S
  TATGGATGCA ATTGGTACCT TGGTTAATCT ATCTGGGGTA ATAGGTTCAT GTTTCACCAG
  GAAAAGCTTG CATGTTTTTG ATGGTATGGG GACAGCTGCT ATGGGAGAGC CATACCATCT
  CCCAAGATCC TATGACAAAA TCTCTGTCTA TCTGATGAAC TGTCTGAGAC TTACTTCCAG
  TCCACCCTCT TCCTCACCCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60398368	NES15902903	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46473219					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60398368	NES15902903	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41332129 () rs orientation: forward

Symbol	Name	Function Class
Gm66268	predicted gene, 66268	683 bp upstream
Rr575939	regulatory region 575939	1850 bp distal
Rr575940	regulatory region 575940	716 bp distal
Rr575941	regulatory region 575941	797 bp distal
Rr575942	regulatory region 575942	199 bp distal
Rr575943	regulatory region 575943	122 bp proximal