rs46470976 SNP Detail

Summary

• ID
  rs46470976
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:70092250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCAGGTTT GCCTGGTGGA
  GCAAAACCGT CTTTGTCTTG AGAGAAAGAA AATGGCCAGG TTTCCATCAC TGCCTTTAGG
  GAGACACTTC CACCAATCTG AAGAGCTCTC ACTAGTTCCT GCCTCTTAGA GGCTTGCATC
  TCCTCCCAGT AGTACCAGGG CTGGAGACTG TGCCTTGACA CATGGGTCTT GGGGGGAGAC
  W
  TTCCACAACC AAGTTACCAT GGTAACTGCC ATGTGACATC AGAGATAGTA ATCACCCAGC
  ATTTCCCCCA ATGCTTCCTT TGACTTTCCT GTTCTCACTG ACTATGAAAG AGACTGAACA
  TGCAGAGTGA AATAAAGCCC CAGGGCGCCA GGAGACAGGG CCACTCCTGT GTTGTCTAGC
  AGCAGCTAAG TCTGGTGAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss146733400	ENSMUSSNP5672293	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs46470976					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70092250 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Myo3b	myosin IIIB			Intron
				Noncoding-Transcript-Variant
Rr558530	regulatory region 558530			1916 bp distal
Rr558531	regulatory region 558531			945 bp distal
Rr558532	regulatory region 558532			193 bp distal
Rr558533	regulatory region 558533			within coordinates
Rr558534	regulatory region 558534			590 bp proximal