rs46467693 SNP Detail

Summary

• ID
  rs46467693
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45535587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAGAAAAG ATGTTTAGTT
  GTTCTAAAGA AACCACTAGA AGGATAAAGA GAGGTACTTC CAGTCGGTTG CTCATCTATG
  ACACTTGACA TGGCCGAACA AAAGTGAGCG TGCTGTGAGG TAAGGCGCAC AGTGGACTTT
  AATGGTTAGA ATGGATGTAC AGTGCTGCAT GGTTCCTGTC AGTGCTGGGA ATGGTGGCAC
  Y
  CTGTCATCCC AGTATTGAGG CCAGCCTGAG TTACACATGA GGCCTTGTTT TACAAAGAAA
  GAAAAGCTGA GTTTTCATAT TGGTTATACG TTGAAACAGT AACACATTGG ATATATTAAG
  TTAGATGAAA TATATTGAAA TGGACTTGTT TTCTAATGAA GCCTTGAGCA AGACTGCATC
  CTCAGCCCAG GGCTGGGTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61002687	NES16125613	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46467693					SNP	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61002687	NES16125613	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45535587 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Syngr4	synaptogyrin 4			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant