rs46465727 SNP Detail

Summary

• ID
  rs46465727
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19400439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAATTCTC ACTCATCTGA
  AGTTAGGATA CTTTATGCTA CAAGATAATT TTAGCAGGAG AATCTGTTGC ATAGCATTTG
  CTTTCTCAGG ACTGTGCCAA TAGTGCTTTC ATTTCAAGGA CTTTTCCCAG GAATTCCTGC
  CTTCAGTTGT CTGGGCACCC CCTTACTTCT TTTTTCCAAC ACCTTTCTTC CCCTCACTAG
  R
  TTTCATTTAT TTTGTTGCTT AATTTTTCCC CAAGTCTTTT TTTAAAATAA TATTTCCCTA
  AAATTTCGCT CAGAGTTTCA GTTTACCAAT CACAAAAATT CCTTGTTCTT TGACTGCTTC
  ATTTTTTTTT TTTTCAGTTA AACTCTGGAG AGCGGGCACC TTAGTTATTT CCATCTGTCA
  TGTTGATTTC TTATCACACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134667098	ENSMUSSNP5104981	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46465727					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19400439 () rs orientation: forward

Symbol	Name	Function Class
Rr573976	regulatory region 573976	1970 bp proximal