rs46461579 SNP Detail

Summary

• ID
  rs46461579
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163552774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTCACAT CCCCTTCTGT
  ATTTTCTTGA TGGTACTGAA ACTTCAGCCC AGGACTGTGT TATGCTAGGC CAGTGGTTTG
  TCACCCAGTT ACACTCCCAG CTTTTTAGAT GTCAGTGTGT TAGGCAGAGT GCCAAACAAC
  TTGTAGATAC GTTGCAGAAT TACTACAGAG ATAGGTGGCT GCTTTCCCTT TTGTTTGCAC
  R
  TGGGACCCCT AAGGTTGGGG AACTGTCCCC AGAGGCACCC ACCTGATACC AACAGAGCTA
  GAGCTTAGCC CAGCCTGGGA CCTTGGCAAG CCTGCCTGGA AGTGATTTCA CTTTCCCTTC
  CTGCCCCTCC CTCCATAGGA GAGGGAGGCT GCCCCTTTCT GGAAGTTCTG CTTCGAAGCT
  GAGCCCCCAA CTAAGCTTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148209663	ENSMUSSNP4596624	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46461579					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163552774 () rs orientation: forward

Symbol	Name	Function Class
Pkig	protein kinase inhibitor, gamma	Intron
Rr569473	regulatory region 569473	within coordinates
Rr569474	regulatory region 569474	1523 bp proximal