rs46459245 SNP Detail

Summary

• ID
  rs46459245
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116763154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAACCCA AAGGTGTTAA
  CGTGATGATT GATGTTGGAT ATCTGGGGAC TGCAGCACCT TTTTTGGACC CCATTCAAAA
  AAAACAAAAA ACAAAAAACA AAAAACAAAA CAAAACAAAA CAAAAAAACA AACCCCGACA
  ATCTTCAATT TCAGGAAGGT GCCCATTTTG ACAGCCTGAA GTTATGCAAG AGCAAGGAGC
  R
  AGCCTGTGAA AGTGTGCCCT GGGTGGACAG TCCCTGCCCT TTAAGGAAGG CAGTGAACCC
  CGGGGAAACT CAGGTCAGAG CAGAGCCCAG GAAGCTTTGC AATGGACTTT GTTTTCTTTT
  TCCCACCTAT TCTTTAAGTG CATGTTGATG TGGTGAGCCC CAATTACCAT CCACCACATT
  ATTATGTGTT TGGATCAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60435442	NES15933266	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46459245					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60435442	NES15933266	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116763154 () rs orientation: forward

Symbol	Name	Function Class
4930455H04Rik	RIKEN cDNA 4930455H04 gene	Intron
Gm52613	predicted gene, 52613	1492 bp downstream
Palmd	palmdelphin	518 bp upstream
Rr583817	regulatory region 583817	1228 bp distal
Rr583818	regulatory region 583818	187 bp distal
Tssr35360	transcription start site region 35360	954 bp upstream
Tssr35361	transcription start site region 35361	937 bp upstream
Tssr35362	transcription start site region 35362	872 bp upstream
Tssr35363	transcription start site region 35363	813 bp upstream
Tssr35364	transcription start site region 35364	737 bp upstream
Tssr35365	transcription start site region 35365	716 bp upstream
Tssr35366	transcription start site region 35366	690 bp upstream
Tssr35367	transcription start site region 35367	671 bp upstream
Tssr35368	transcription start site region 35368	567 bp upstream
Tssr35369	transcription start site region 35369	501 bp upstream
Tssr35370	transcription start site region 35370	478 bp upstream
Tssr35371	transcription start site region 35371	9 bp downstream