rs46459216 SNP Detail

Summary

• ID
  rs46459216
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:154596672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAACCTCTG AAACTTTAAG CAAGCCCCAA TTAAATGCTT
  TCCTTTATAA GACCTGTCTT CTCTTCACAG CCATGAAACA CTGACTGAGA TGGAGGTGTG
  R
  GTTTTGTGAA GGTCACTGAG GGTAGGTTTG GGGATTTGAA ACATTTTCTT TCATTCTCAT
  GTGCTTTCTG TCTCCTGCTT GTAGATCAAG ATGTGAACT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136120256	ENSMUSSNP5396413	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46459216					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154596672 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587909	regulatory region 587909			1919 bp proximal
Tnni3k	TNNI3 interacting kinase			Intron
				Noncoding-Transcript-Variant