rs46454687 SNP Detail

Summary

• ID
  rs46454687
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38539223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAGGTCACG TCCCGCATAG ACCCCGCCCC TCCCAGTTAA
  CCCCCACTCT ATTGGCTCGC CTCTCGCAGG TCCTGCCCAA TCGTTCTTTG TTCTCCAGGC
  C
  CCGCCCAGCC CATAGCCCCG CCTCATCTGC CCAGCCAGTC CTCTCAGGCC CCACGCGCCA
  CGGCCCCGCC CCGCTCCGCC CCTGTCCCCC GGCACCCGT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134837207	ENSMUSSNP4500687	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss320719955	CHEV_3_38383996	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46454687					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38539223 () rs orientation: forward

Symbol	Name	Function Class
Ankrd50	ankyrin repeat domain 50	230 bp upstream
Cpgi13104	CpG island 13104	within coordinates
Gm65619	predicted gene, 65619	31 bp upstream
Rr397648	regulatory region 397648	24 bp downstream
Rr575675	regulatory region 575675	828 bp distal
Rr575676	regulatory region 575676	within coordinates
Rr575677	regulatory region 575677	42 bp proximal
Tssr28929	transcription start site region 28929	121 bp upstream
Tssr33057	transcription start site region 33057	283 bp upstream
Tssr33058	transcription start site region 33058	252 bp upstream
Tssr33059	transcription start site region 33059	210 bp upstream