rs46454225 SNP Detail

Summary

• ID
  rs46454225
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87662726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CAAAAAAAAA GAATGAAGTT CTGGGGGCTG GAGAGATGGC
  TCAACGGTTA AGAGCACTGA CTGCTCTTCC AGAGGTCCTG AGTTCAAATC CCAGAAACCA
  Y
  ATGGTGACTC ACAACCATCC ATAATGAGAT TTGACCCCCT CTTATGTATC TGAAGACAGC
  TACAGTACTC ATGTACATAA ACTAAATAAA TCTAAAAAAA A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146630401	ENSMUSSNP859089	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46454225					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87662726 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13335	CpG island 13335	444 bp proximal
Pear1	platelet endothelial aggregation receptor 1	Intron
Rr579538	regulatory region 579538	701 bp proximal