rs46442409 SNP Detail

Summary

• ID
  rs46442409
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:7731048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTACACG CAGAAAGAAA
  AGAAAACGAT TAAACTTATT GGATCAGAGC TCCTAATATT GAGGAATCAG TAGGATTCCG
  TTGCTTTGGA GGCCGGAGAG AAAATGCTAT TTCTTTGTAT GCCCCAGCTT CTAGAGACGA
  CCCATATCCC AGACTCACAG CCAATTCCTA ATTCACCTTC AGCTTCTGTT TCTGTCATCC
  Y
  TGTCCTCAAA GGCTTCTGCT TTCTGCTCAC AGTGACTCTA AGAATCGCCT GGGGCCCACC
  CACACAGTTC TGAGATAGTA TCTCCATTTC AAGATCTTTA ACGTACGTAT ATCAATCTAA
  TCAAGGTCCC TTTTGCTGTA AAAGCCAGGA CACTCACTGT GCAGAGGAAG AGTACAAAGT
  ACTTAACCTG ACACTTTAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss132954063	ENSMUSSNP494299	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs46442409					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:7731048 () rs orientation: forward

Symbol	Name	Function Class
Rr626314	regulatory region 626314	1124 bp proximal
Rr626315	regulatory region 626315	1929 bp proximal