rs46440804 SNP Detail

Summary

• ID
  rs46440804
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148174210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTACAAGTC TGCCATTGTA
  ATGGACAGCT ATTCTGATTT TGTTTCTAGG CAGAGTATTT CTGTGATGTC CAGGCTGGCC
  TTGAACTTGA GAGTTTCCTG TTCTATCCTC CCAAGGGCTG GGATAGCAGG CATGTGCCTT
  TACCTGGGTC TAATTATGGT TTATTGCATA AGTTTATTTA ACTGTTATAA AAATTATATA
  Y
  AGTAGCAAGT TGTTTCCATA CCTGTATGGC AATATATCCT GTGATGTTTA TTTCTTAATC
  ATGTTTCTTT AGTTTGTATG TTGATATGTA GGCATACATT CCATGCCCCT ATGTGGAAGA
  GGACCAACTT CCTTGAGTTG ATCTTCACTT TTCTACCTTG TTTTTGAGCG AAGGTCTCTT
  CTTGTTTCTA CCATTTTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147992093	ENSMUSSNP4261228	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46440804					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148174210 () rs orientation: forward

Symbol	Name	Function Class
Agtrap	angiotensin II, type I receptor-associated protein	1722 bp upstream
Cpgi15288	CpG island 15288	1202 bp distal
Rr377390	regulatory region 377390	within coordinates
Rr604583	regulatory region 604583	1733 bp distal
Rr604584	regulatory region 604584	1232 bp distal
Tssr44579	transcription start site region 44579	1726 bp upstream
Tssr44580	transcription start site region 44580	1697 bp upstream
Tssr44581	transcription start site region 44581	1684 bp upstream
Tssr44582	transcription start site region 44582	563 bp upstream
Tssr44583	transcription start site region 44583	535 bp upstream