rs46440652 SNP Detail

Summary

• ID
  rs46440652
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74794600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAGAAAA TAGGGTCCTT
  TTCACACATA CCCACACTGT CAGTAACACC GTTCATCCTT GAGAAGTTAA GTGACAGAGG
  GTCACTTTAA TATTGATGCC TATGTGCACA CCCATGCACA CAGTTGGCTC AGGCTTTTAT
  GAGACGGTCT AAGAATTCCT TGTGCCGTTT CAGCCGGCTG CGAAAGCAGG CAAGACCATC
  Y
  TTTAACTTTT GTGGGCATGT ATTCAACCTT CTTCACAAAC CTACATTTAA TTTCATTGAC
  TTGTCTATTT TTTCTTCAGA TTTTGCTTTT AATCCTTGCC ACAAGAGCTG CCTCCCATCA
  AAATGTTCAT TTTCATTAGG GATGGGAGGA AGATTTCTCC GAGGGGAGTG TCTGCTTTGA
  AGGAAGAAGC AGAGGGTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss146764205	ENSMUSSNP5704531	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46440652					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74794600 () rs orientation: forward

Symbol	Name	Function Class
Gm75057	predicted gene, 75057	1200 bp upstream
Igs15	intergenic site 15	within coordinates
Rr559413	regulatory region 559413	12 bp proximal
Rr559414	regulatory region 559414	278 bp proximal
Rr559415	regulatory region 559415	844 bp proximal
Rr559416	regulatory region 559416	1219 bp proximal