rs46434829 SNP Detail

Summary

• ID
  rs46434829
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153084325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAACCAAG GACTCCTAAG
  AACCAGCGGA GGGATGCAAC TTAAATGCAG TCGTGGATCA TCATTATATA ATCCATCCCT
  TCTCTCAATC CTTGAGTAGC TTGCATTCCT GACCATGGCC ATCATCTGAT GGCCTGACCT
  TGCAAGATTG GCTCCACTCT TCTCCACACC CCTTCTCCCA TGGCCCTCTG GCTACAGCCA
  C
  AGTAACCGGC TTTCTATTGC TTACAGACAT AAAGGTCTAT GAGCTATTCT TCTCGGAGTA
  CCTTCCTATA ATTTCTGCTA ACTCTTTCTC ATCCTTGAAG TCTCAACATA CGTGTCACCA
  AAGAGGACTC CATTGACCTC TCTACTTGTC ATTTCCTGAG TCTCCCTGTC ACCAAACCTT
  TTCATTTTTT CCCTTGCAAT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss147988446	ENSMUSSNP3092342	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46434829					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153084325 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12482	CpG island 12482	513 bp distal
Plagl2	pleiomorphic adenoma gene-like 2	1047 bp upstream
Pofut1	protein O-fucosyltransferase 1	Intron
Rr567588	regulatory region 567588	990 bp distal
Rr567589	regulatory region 567589	817 bp distal
Rr567590	regulatory region 567590	428 bp distal
Tssr20880	transcription start site region 20880	1479 bp downstream
Tssr20881	transcription start site region 20881	1462 bp downstream
Tssr20882	transcription start site region 20882	939 bp downstream
Tssr20883	transcription start site region 20883	802 bp downstream
Tssr20884	transcription start site region 20884	787 bp downstream
Tssr26895	transcription start site region 26895	1051 bp upstream
Tssr26896	transcription start site region 26896	1011 bp upstream
Tssr26897	transcription start site region 26897	994 bp upstream
Tssr26898	transcription start site region 26898	905 bp upstream
Tssr26899	transcription start site region 26899	681 bp upstream