rs46430056 SNP Detail

Summary

• ID
  rs46430056
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131109483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACTGTTA AAACAGGCAC
  GGAGGCGACA CTGTTCCACC CCCCAGTGTG GTGGGGATAG GTTGTAAAAC TCTGCCAGTG
  ACACTAGTGG AGACTTTGAT CCACGGTCGC TGTCTAGTCC TCGTGCTGGG ACTCGCAGGC
  ACACTATGAC TCTAAAATCA GTAACTGAAA CACAAGCCTC TCACCCAGCA TGGGTGGCAA
  Y
  CAACTTTTCT ACGACCACTC TCATTTTCGT TTTATGTTCG TTATTGCTCA GGAGCCTTGC
  ACACGGTTCG GGCATGTGAA GCGTCCCCTT GGCTCTGCAA TGGAGGCAGT TTAGGGAGTG
  AGCAGGGGCC CCAGAACAGG CCACTCCTTC CCTCAAGCAC TTCTTAAAGC ACGGGGAGAA
  CTTGATGCTT TCACAGGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61081005	NES16597784	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46430056					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61081005	NES16597784	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131109483 () rs orientation: forward

Symbol	Name	Function Class
4930534D22Rik	RIKEN cDNA 4930534D22 gene	within coordinates
Rr585332	regulatory region 585332	178 bp proximal
Rr585333	regulatory region 585333	1643 bp proximal