rs46429889 SNP Detail

Summary

• ID
  rs46429889
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156957623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCCTCTCGG GACAGACTGC AACAGCCATG TGCCAGCATA
  GCTGGGTTAT AAAACAGCTG GGTTTTAAAA CAGCTGCACA GCTACTCTCA AGACAAGACA
  Y
  TCAAAGCATG TTTGAAACTA AATTTTTGTT TTAGAAATGA GATAATTGTT CCTCAATCTA
  GCTCCTGTGT GTTTGTGTGT GTGTGCACAT ACAAGATGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148092221	ENSMUSSNP1791265	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46429889					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156957623 () rs orientation: forward

Symbol	Name	Function Class
Rr568435	regulatory region 568435	743 bp distal
Rr568436	regulatory region 568436	1251 bp proximal
Rr568437	regulatory region 568437	1424 bp proximal
Rr568438	regulatory region 568438	1825 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron
Tssr27143	transcription start site region 27143	1377 bp upstream