rs46428913 SNP Detail

Summary

• ID
  rs46428913
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100869591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAACACC CTGACCCTAG
  GGCAGTGGTT CTCATCCTTC CTAATGCTTC AACCCTTTAG CACAGTTCTT CATAATGTGG
  TGACTCCCAA CCATAACATT ATTTCACTGC TACTTTATAA CTATAATTTT ACTACTGCTA
  TGAATCATAA TACAAATGTC TGTTTTCTGA CAGTCATAGG CAATCCCTGT GAAAGGGTCA
  W
  TTGACTCCCA ACAAGGTTCC AACTCACAGG CTGAAAACCA CTGCCTTAGA GACAAAGCAC
  AAGTCAAGAC TGGCCTGCTG TTTTGGTTTG TTTTCATTAT GTGTATCTGT ATGCACAGAA
  ACTGTGGATA AGTATGTAAA TGTGAGTGAA GGTGCCGAGG CGAAGAGAGG CTGTCAGAAC
  CCTGGAGCTG AGGTTACAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135543259	ENSMUSSNP4657547	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
ss320850381	CHEV_3_100766198	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46428913					SNP	A	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100869591 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm66499	predicted gene, 66499			1711 bp upstream
Rr581933	regulatory region 581933			1881 bp proximal
Rr581934	regulatory region 581934			1973 bp proximal
Ttf2	transcription termination factor, RNA polymerase II			Intron
				Noncoding-Transcript-Variant