rs46426343 SNP Detail

Summary

• ID
  rs46426343
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136640820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTG GGCGAGTCAC CTCTAGTCAC
  C
  TGATCCCCTG GAAGGGGGGG GATGA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147585058	ENSMUSSNP5041731	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321359225	CHEV_4_136469424	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46426343					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136640820 () rs orientation: forward

Symbol	Name	Function Class
Gm69228	predicted gene, 69228	542 bp upstream
Rr602496	regulatory region 602496	1778 bp distal
Rr602498	regulatory region 602498	355 bp distal
Rr602499	regulatory region 602499	648 bp proximal
Rr602500	regulatory region 602500	1234 bp proximal