About   Help   FAQ
rs46426251 SNP Detail
Summary
  • ID
    rs46426251
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr3:36666610 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATATTCTTAT CAGTTAACTT
    TCATTTTGAT GAAATATGTC AGAGAAGGTC GGAATACAGG AAACAATCCA AAACGTTTAA
    AATATATATA TAATCGTGTA ACATTACTGG CAAGGAGCTT CAGAAAATAT CTTCAGAAGC
    CCTTCCTATT AGTGATGGGA AATAGGGGAC TTCCGCTGAA ATAACATACC TGCTGACATC
    M
    TAAGATTCCA GTGAAACTGA CCATGACTAT TTACAAAAGG CACAGCGAGG AAAAACAGCA
    TGACTTGTTC ATCAAAGGTG ACTGTCACCA GAACTTAAAA ACAACCAATC ATGAGAAAAC
    CTGCTTGGTG CATGTATAAC TATTCTGAAT TTTTAGGCAC GCTGCTACAG TTTTAAGCAA
    TCCATTTAGT TTAACATTGT                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
DBA/2J
LG/J
SM/J
ss134784773 ENSMUSSNP5795319 ENSEMBL ENSEMBL_Sanger f SNP A A
ss320703496 CHEV_3_36511383 CHEVERUD SCREENING_POP f SNP C A
SNP Consensus Information
SNP Consensus Type
A/J
DBA/2J
LG/J
SM/J
rs46426251 SNP A A C A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:36666610 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Bbs7 Bardet-Biedl syndrome 7 Intron
Cpgi13088 CpG island 13088 635 bp proximal
Rr575383 regulatory region 575383 160 bp proximal
Rr575384 regulatory region 575384 814 bp proximal
Rr575385 regulatory region 575385 967 bp proximal
Tssr28874 transcription start site region 28874 1021 bp upstream
Tssr33039 transcription start site region 33039 878 bp downstream
Tssr33040 transcription start site region 33040 909 bp downstream
Tssr33041 transcription start site region 33041 957 bp downstream
Tssr33042 transcription start site region 33042 1000 bp downstream
Tssr33043 transcription start site region 33043 1028 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/18/2025
MGI 6.24
The Jackson Laboratory