rs46426171 SNP Detail

Summary

• ID
  rs46426171
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:33077301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGAGAGGC TTTGTGGGGT
  TGAGTAAGAG AAAAACATAA TGACATCTAT GTGCAAAATG TAGTGAAACC TATTGTTTCA
  TATGCCAATT TAGAAACAAG CTAACCTTCT ATCTTCAGAC AAGGACCAAC AAGGACCTGA
  GGCTGCCATG GCTACTGGAC TAAACTTGGA TGCAGATTAT TCTACCAGTG TTAACCTTCA
  R
  ATGATAATAA CCTCAACTTG ACCAGAGCAC TTGACCTGGG TTTGTCATCC TTAGAAACTG
  TGAGTCAAGA AACACGTGTT CTAAGCTACT GTGTTTATGC ATGGAGGCAG ATGAAATTTT
  AAGCCATGCA GATGCAGGAC CTCAGTGAAG AAACACTGGA CTCTGGGAGA TCAATGTTCT
  AGTCTGGCCA TTTGACACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60876001	NES15978095	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46426171					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60876001	NES15978095	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33077301 () rs orientation: forward

Symbol	Name	Function Class
Rr628170	regulatory region 628170	930 bp distal