rs46425974 SNP Detail

Summary

• ID
  rs46425974
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:105804663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGACAAA AACACAGTGT
  ACTTACATAT AATAATAAAT AAATCTTTAA AACAAACAAA CAAACAAGAG CAATGGCAAC
  TTGTGATGGT TTGAATAAAA ATGGCTCCCT TAGGTTCATA GGGGAGTTGC AGTATTAGGA
  GGTGTGGCCT TGTTGGAGGA ACTGTCACTG TCTCAGAAGC TCAAGCCAGG TTTAGTGGCT
  Y
  ATGGTCTCTT CCTGCTGCCT GCTGATCTAG ATGTAGAATT CTCAGTTACT GTTCCAGCAC
  TATGTCTGTC TACGTGCCAC CATGCTTCCT ACCATGATGA TAATGGATAA AACCTCTGAA
  CTGTAAGCCT GCTCAGTAAA ATGTTTTCCT TATAAGAGTT GCTTATAAGG CTGGTAAGAT
  GGCTCAGAGG GTAAGAGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135578416	ENSMUSSNP5861386	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss320863587	CHEV_3_105700265	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46425974					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105804663 () rs orientation: forward

Symbol	Name	Function Class
Rr375530	regulatory region 375530	1755 bp downstream
Rr582805	regulatory region 582805	1809 bp distal
Rr582806	regulatory region 582806	1537 bp proximal
Tmigd3	transmembrane and immunoglobulin domain containing 3	Intron