rs46424911 SNP Detail

Summary

• ID
  rs46424911
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:85239023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCAC ACATGCATGT GCACTTATGT
  R
  TGAGTGCCTG TGGAAGCCAG AAGCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss133351526	ENSMUSSNP2948523	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46424911					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85239023 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr824	regulatory region 824			579 bp proximal
Rr633161	regulatory region 633161			856 bp proximal
Rr633162	regulatory region 633162			966 bp proximal
Rr633163	regulatory region 633163			1097 bp proximal
Rr633164	regulatory region 633164			1275 bp proximal
Sfxn5	sideroflexin 5			Intron
				Noncoding-Transcript-Variant