rs46422070 SNP Detail

Summary

• ID
  rs46422070
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:31730731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAAACTAA ACGGGAAGGG
  GAAAAAAAGA AGCCGATACG GACTGCCACT GATCCTCTAG GCTCGTGGTA ATCAACTACT
  TGCTCAAAGA ATCCTTTGAC CGAGCACAAC GTATACATAA AGACAGAAAT AACATAAAGC
  AAAACTTTAT GTCGTGTGAA GGGTCTTTAG GGAGATGCTC ACTTCAGGTT CTGCGTGCGT
  Y
  CTGCCTTTGG GAGGAGTCGG GTTAAGAACC CAAAATCCCT TAAGAGCAAC TAGAGCCCGG
  TTGCAAGACG CAGACCAAAG ATAGAGCATG TTTTGTGCTC AGTGAGAAAA CCTTTAGGGT
  TCCCTAATAT ATGACCCTCA TCAGGGAGGT GCCAAGCGGG CCAAAATTGA ACACCAGGAC
  CCCCTAGAAG CCTGGGCAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60257942	NES15756514	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46422070					SNP	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60257942	NES15756514	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31730731 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm50103	predicted gene, 50103			247 bp upstream
Rr370216	regulatory region 370216			520 bp upstream
Rr525507	regulatory region 525507			617 bp distal
Rr525508	regulatory region 525508			within coordinates
Rr525509	regulatory region 525509			606 bp proximal
Rr525510	regulatory region 525510			984 bp proximal
Tssr147287	transcription start site region 147287			460 bp downstream
Tssr147288	transcription start site region 147288			496 bp downstream
Wdr4	WD repeat domain 4			Intron
				Noncoding-Transcript-Variant