rs46416916 SNP Detail

Summary

• ID
  rs46416916
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82052315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCA GCTGCCCAGG GCTGGCGGCC
  Y
  TGCGTGGGAG ACAGTCGCCC ACGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135401174	ENSMUSSNP2561404	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46416916					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82052315 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13288	CpG island 13288			within coordinates
Gm29921	predicted gene, 29921			1390 bp downstream
Gm65571	predicted gene, 65571			1207 bp downstream
Gucy1a1	guanylate cyclase 1, soluble, alpha 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr578750	regulatory region 578750			within coordinates
Rr578751	regulatory region 578751			55 bp proximal
Rr578752	regulatory region 578752			769 bp proximal
Tssr33784	transcription start site region 33784			730 bp downstream
Tssr33785	transcription start site region 33785			750 bp downstream
Tssr33786	transcription start site region 33786			857 bp downstream