rs46411967 SNP Detail

Summary

• ID
  rs46411967
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141296503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACAATAAG AGCTCCTGTT
  TCTATAAAAT CATTTGAGAT ATTCTAAGCT CATATTTTAG AAGATCAGTC AGAGAGGGCA
  GAGGTCCTCT GTTTAGGGCA CTTTCTATTA TCCAACAAAA CATCAAAAGT AATTGGAATT
  GTATAAATAT TCAAAGGGAA CCAGACTAGG GGCACTCTTG GATGTCTTCC CTGAGTACCG
  M
  GCTTGGAAAA AAGCTCATTC CAAGGGTCTG CAGCCTCGTG GGCTGGAGAC TGCATTACTA
  CAACACTTCT GCCTTATGTA CAGTGGTGCT CAATAAATAT CCGTTTACTT TAATTGAGTG
  GGAATAAATA GCATTTACCA GAAACCCTTT GCTGGCAGAC AGTTGCATTA GGCTGCTGAG
  AACTATAGCA TATTCTCCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61092025	NES16588687	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A		C	A	C		A
ss320993586	CHEV_3_141253706	CHEVERUD	SCREENING_POP	f	SNP									C				A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46411967					SNP	A	A	A	A	A	A	A	A	C	C	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61092025	NES16588687	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141296503 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586339	regulatory region 586339			873 bp distal
Tssr32042	transcription start site region 32042			1322 bp upstream
Unc5c	unc-5 netrin receptor C			Intron
				Noncoding-Transcript-Variant