rs46411290 SNP Detail

Summary

• ID
  rs46411290
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:121070012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGA GAGCCTTAGA AACAGCTCCT
  Y
  AGGGAAGCTG TTCCCTAGAA ACAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss61237516	NES16854876	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	C	C	T		T	C	T		C
ss137064647	ENSMUSSNP4357212	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss323230738	CHEV_9_121150064	CHEVERUD	SCREENING_POP	f	SNP									T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs46411290					SNP	T	C	C	T	C	C	C	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61237516	NES16854876	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:121070012 () rs orientation: forward

Symbol	Name	Function Class
Gm56090	predicted gene, 56090	1396 bp upstream
Rr688904	regulatory region 688904	365 bp distal
Rr688905	regulatory region 688905	457 bp distal
Rr688906	regulatory region 688906	945 bp proximal
Ulk4	unc-51-like kinase 4	Intron