rs46405977 SNP Detail

Summary

• ID
  rs46405977
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121997257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCATGTGA CTCTCCCACA GTAGGTCCCA CCTCTTCTGA
  AGGTGGGCAG AACTTTGATT TTATTTATTT TATATATGTG AGTACACCAT CGCTGCACAC
  Y
  GTCGCTGTCC TCAGACACAC CAGAAGAGGG CATCAGATCC CATTACAGAT GGTTGTGAGC
  CACCATGTGG TTGCTGGGAA TTGAACAATT TTGTGTAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320909572	CHEV_3_121906526	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs46405977					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121997257 () rs orientation: forward

Symbol	Name	Function Class
D3Jor1	DNA segment, Chr 3, Barbara Jordan 1	238 bp proximal
Gm43158	predicted gene 43158	within coordinates
Gm46822	predicted gene, 46822	within coordinates
Rr584257	regulatory region 584257	828 bp distal
Rr584258	regulatory region 584258	16 bp proximal